MaizeGDB
jobs | upcoming events | sitemap
 | docs | bulk data | browse data | tools | login / register | links 
homeA popup window providing help for using the search form to the right  
COmposite GENotype FInder TOol: Cogenfito
Genotype Browser

COGENFITO facilitates several querying and browsing applications to leverage genotype data sets and publically available lines with immortalized genotypes:

  • Select lines with specific composite genotypes for breeding programs aimed at QTL finemapping and characterization of effects.

  • Browse and/or download genotypic information from isoline populations to assess levels of recombination, missing data, and segregation distortion across genomic regions or genomewide.

  • Identify lines with recombination breakpoints, and the map interval that localizes the recombination event.

  • Visualize the recombination breakpoints that support the genetic order of markers relative to their order in the physical map.

  • Compare map resolution, missing data levels, and marker placement between different genetic maps.

  • Upload your own trait data for isoline populations and view them as a heat-map in tandem with genotypic data.




Select a Genetic Map:



*See a list of markers for this map
*See a list of lines comprising this map

Upload numerical trait data for this isoline population 

Locus 1:

Marker:

Genotype:


Genotype must match at this marker

cM Range:



home  

Be sure to cite us!

This page is HTML 4.01 valid!