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Bulk Data

Want to retrieve some summary reports on interesting sets of data? You can find them here. If you have ideas for more reports, use the link at the bottom of the page to send us feedback.

Sequence Data

All Mapped markers in MaizeGDB: All locus sequences that are currently mapped in MaizeGDB.
Sequence data from PlantGDB: Bulk sequence downloads of BACs, AcDs, cDNAs, ESTs, GSS, PEP, Probes, and PUTs.
MAGI contigs: Bulk sequence downloads of MAGI (Maize Assembled Genomic Islands) contigs constructed from genomic contigs and MECs, constructed from clustered EST contigs.

Locus Reports

Genes Found in Maize: A complete list of genes found in maize.
Gene Candidates Found in Maize: A complete list of gene candidates found in maize.
Gene Symbols: A complete list of gene symbols found in maize.
Detailed Transgene Summary: A detailed summary report on transgenes in the database.
Detailed Gene Family Summary: A detailed summary report on gene families in the database.
Mapped Positions of Phenotypic mutants : Phenotypic mutants with their gene name, phenotype name, chromosome, IBM2 map position, Genetic 2005 map position, and Genetic 2008 map position.

Probe/Molecular Marker Reports

Overgo Sequences: A list of all overgo sequences in the database; useful for doing "Find" queries.
Complete List of MITEs: A list of all MITEs in our database.
Complete List of YACs: A list of all YACs in our database.
Complete List of SSR Repeats: Provides a complete list of SSR repeats available in our database, linked to their respective full SSR records.
SSRs Derived From Genes: An up-to-date listing of SSRs and the genes from which they are derived, formatted in an easily-downloadable table.
Physical locations of IBM2 markers : IBM2 marker with probe name, probe type, locus name, mapped chromosome, map position, B73 chromosome, sequence, chromosome start position, chromosome stop position. This data is generated for the following maps: NAM, IBM2 2008 Neighbors, Genetics 2005, and Genetics 2008.
Physical locations of IBM2 2008 markers and ISU Integrated markers on B73 Refgen_v1: Markers with probe name, probe type, locus name, sequence, genetic map chromosome, map position, B73 chromosome (based on IBM2 2008 Markers), chromosome start position(based on IBM2 2008 Markers), chromosome stop position(based on IBM2 2008 Markers), B73 chromosome (based on ISU Integrated IBM 2009 Markers), chromosome start position(based on ISU Integrated IBM 2009 Markers), chromosome stop position(based on ISU Integrated IBM 2009 Markers). This data is generated for the following maps: NAM, IBM2 2008 Neighbors, Genetics 2005, Genetics 2008, and ISU Integrated IBM2009 .
UniformMu insertions release 2: Locus name, AGP v1.0 pseudomolecule, AGP v1.0 pseudomolecule host site duplication start, Host site duplication end, Maize gene id, rice homolog, rice description, Arabidopsis homolog, Arabidopsis description, Variation, Stock Center Accession
UniformMu insertions release 5 for B73 RefGen_v2 (April 2012): Locus Name, Chr, Chr_Start, Chr_End, Variation, Stock Center Accession
List of Genes with UniformMu for B73 RefGen_v2 (September 2012): List of gene models from the Filtered Gene Set (39,476 genes) that have UniformMu insertions including 100 bp upstream or downstream.

People/Organization Reports

Websites of Maize Researchers: Want to visit the websites of other maize researchers? This is a summary report of the URLs we have in our database.
Maize breeders' names linked to their person records: Provides a batch summary of all public (and some private) maize breeders along with links to their contact information.


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Last updated 1:41 pm, Dec 03, 2014.

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