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Chromosome 8, Region 1 (bin 8.01)

This page summarizes the data available describing features found in bin 8.01 in maize. What is a bin, and why is it important?
This region is highlighted in red on the image of maize chromosomes to the right.
You can click on regions of that image to move to other portions of the maize genome.

Genome Browser Links for 8.01
Genes in Bin 8.01
Other Loci in Bin 8.01
Bin 8.01 High-Density Map Regions
Sequences in Bin 8.01
EST Contigs in Bin 8.01
SSRs in Bin 8.01
BACs in Bin 8.01
Mapped loci w/ accessions in Bin 8.01
Map Locations of Sequences in Bin 8.01


Bin Viewer pages




Genome Browser pages


Genome Browser Links for 8.01

   B73 RefGen_v2 sequence   
   B73 RefGen_v1 sequence   
BAC-based assembly
    

Based on MaizeSequence.org B73 RefGen_v2 sequence

(Click on image to go to the Genome Browser)





Genes in Bin 8.01

Here are the 13 genes found in this chromosomal region.

ats1 atrazine susceptible1 bif1 barren inflorescence1
clm1 modifier of cl1 crp*-N1429A crumpledN1429A
ct1 compact plant1 fl*-N1163 flouryN1163
hsp1 heat shock protein1 lrk1 Ser/Thr receptor-like kinase1
ms23 male sterile23 psei4 cystatin4
psl42 position shift locus42 rnp2
v*-N29 virescentN29

Other Loci in Bin 8.01

Here are the 102 additional loci found in this chromosomal region.

Ac8162-8 transposed Activator sequence8162 (Point) mu1005190 (Point)
mu1007238 (Point) mu1007315 (Point)
mu1007399 (Point) mu1007896 (Point)
mu1008324 (Point) mu1008429 (Point)
mu1008632 (Point) mu1008743 (Point)
mu1009219 (Point) mu1009340 (Point)
bnl10.17c (Probed Site) bnl13.05a (Probed Site)
bnl6.25b (Probed Site) bnl8.08k (Probed Site)
bnlg1073 (Probed Site) bnlg1194 (Probed Site)
bnlg1252 (Probed Site) bnlg2037 (Probed Site)
cdo293 (Probed Site) cdo406 (Probed Site)
cdo480a (Probed Site) cdo64d (Probed Site)
cdo681 (Probed Site) csu1076 (Probed Site)
csu29c (Probed Site) csu312 (Probed Site)
csu319 (Probed Site) csu332 (Probed Site)
csu368(phr) (Probed Site) csu597b(dah) (Probed Site)
csu675b(prh) (Probed Site) E32M55-315-B73 (Probed Site)
E33M51-449-B73 (Probed Site) E33M61-277-B73 (Probed Site)
E35M50-197.3-B73 (Probed Site) E35M50-197.3-D32 (Probed Site)
E35M58-108.0-D32 (Probed Site) E35M58-108.0-Mo17 (Probed Site)
E38M47-226.9-D145 (Probed Site) E38M47-226.9-Mo17 (Probed Site)
E39M54-563.5-B73 (Probed Site) E39M54-563.5-D32 (Probed Site)
E39M62-379.1-B73 (Probed Site) E39M62-379.1-D32 (Probed Site)
E42M4750-358.5-B73 (Probed Site) E42M4750-358.5-D32 (Probed Site)
isu108a (Probed Site) isu1410a (Probed Site)
isu39a (Probed Site) mHbrBC197-Mo17 (Probed Site)
mHbrBG167-B73 (Probed Site) mHbrMC338-Mo17 (Probed Site)
mHbrMG95-B73 (Probed Site) mmp148 (Probed Site)
mmp85 (Probed Site) mP18M48-363.9-D32 (Probed Site)
mP18M48-363.9-Mo17 (Probed Site) mpik41b(mem1) (Probed Site)
ncr(sod3b) superoxide dismutase 3B (Probed Site) npi(G1E-05) (Probed Site)
npi114a (Probed Site) npi220a (Probed Site)
npi222b (Probed Site) npi253e (Probed Site)
npi301 (Probed Site) npi398c (Probed Site)
npi472e(oec23) (Probed Site) npi79 (Probed Site)
npi91b (Probed Site) P12M49-135.1-B73 (Probed Site)
P12M49-135.1-D32 (Probed Site) P12M49-96-(A7/B73) (Probed Site)
P12M50-96-A7 (Probed Site) P13M47-85.2-B73 (Probed Site)
P13M47-85.2-D32 (Probed Site) P13M47-87.7-D145 (Probed Site)
P13M47-87.7-Mo17 (Probed Site) P13M61-187.3-B73 (Probed Site)
P13M61-187.3-D145 (Probed Site) pbs13d (Probed Site)
rz323b (Probed Site) rz382b (Probed Site)
rz995a(fbp) (Probed Site) ufg38 (Probed Site)
umc1075 (Probed Site) umc1139 (Probed Site)
umc1327 (Probed Site) umc1414 (Probed Site)
umc1483 (Probed Site) umc1592 (Probed Site)
umc1786 (Probed Site) umc2042 (Probed Site)
umc2352a (Probed Site) lrk pseudo (Pseudogene)
q424-1 protein Q424 quantity1 (QTL) q937-2 protein Q937 quantity2 (QTL)
qczm15 QTL response to Cercospora zeae-maydis 15 (QTL) qplht121 QTL plant height 121 (QTL)
qps38-2 QTL position shift protein PS38 quantity 2 (QTL) qps42-2 QTL position shift protein PS42 quantity 2 (QTL)  

High-Density Maps Focusing on Bin 8.01

Here is this region expressed on four high-density maps.

UMC 98 8

0npi220a
.9csu597b(dah)
1.2npi114a
1.4rz995a(fbp)
1.7csu312
3.9csu1076
3.9csu319
3.9csu368(phr)
3.9rz382b
10bnl13.05a
11.7csu29c
11.7rnp2
21.4csu332
21.4mpik41b(mem1)
28.3csu675b(prh)

BNL 96 8

0npi114a
0pbs13d
9.4npi220a
9.4npi222b
21.2bnl13.05a
21.2bnl8.08k
21.2csu29c
27.7ncr(sod3b) superoxide dismutase 3B
36.1isu1410a
59.4bnl13.05c

IBM2 2004 Neighbors 8

0npi220a
5.9csu319
6.7rz382b
10.1npi114a
12.85umc1786
14.22npi222b
26.8umc1139
30.3umc2042
31.8mmp148
33.8umc1592
36.48bnl13.05c
41.64csu29c
41.64rnp2
43.13bnl8.08k
44.4bnl13.05a
48umc1414
49.4AY109699
49.4AY111865
49.4umc1075
55umc1327
71.28ncr(sod3b) superoxide dismutase 3B
76.17csu332
76.17mpik41b(mem1)
83.1umc1483
85.75isu1410a
99.6mmp85
100.72csu675b(prh)
105.4bnlg1194
107.3umc2352a
108.9bnlg2037
112.52bnlg1073

Genetic 2005 8

0npi220a
0 +/- 5rf4 restorer of fertility4
.9csu597b(dah)
1.2npi114a
1.4rz995a(fbp)
1.7csu312
3.9csu1076
3.9csu319
3.9csu368(phr)
3.9rz382b
10bnl13.05a
11.7csu29c
11.7rnp2
21.4csu332
21.4mpik41b(mem1)
28.3csu675b(prh)
43 +/- 10ct1 compact plant1
55 +/- 25ats1 atrazine susceptible1

Accession #s in Bin 8.01

Here are accession numbers of the 242 sequences that have been verified to be in this chromosomal region. Download the DNA sequences in FASTA format.

AC213032 EU961198 FJ910443 FJ911055 FJ910648
AI612462 AI603735 AI714699 AI737407 AI665968
AI691746 AI666018 AI691458 AI666135 AI691508
AI691298 AI834497 AI834001 AI881262 AI740013
AI746143 AW067174 AW091406 AW257849 BE344659
BE510010 BE640603 AI396070 CC742809 CC755544
CC754412 CC753450 CC829707 CC792472 AC200186
AC211875 AY111083 AY109699 EU960590 FJ909608
AI665279 AI621882 AI692082 AI691630 AI834568
AI834652 AI881686 AI770507 AI770529 AI947632
AW066390 AW424504 AW061683 AW499189 AW216157
AW282296 AW288952 AW355938 BE344595 T12666
BE453797 AA661448 T27562 AI396113 AI396124
BH418261 CC738223 CC742810 CC829708 CC835416
AC197566 AC199118 AF034949 FJ910515 FJ909268
AI734651 AI691389 AI881298 AI881506 AI881780
AI881644 AI881438 AI881456 AW066028 AW144868
AW126557 AW216239 AW244937 AW231822 BE553027
AI438681 AI396052 CC822686 CC824011 CC791515
CC791516 AC193789 AC202080 AJ841792 AF100768
AM055633 AY111000 AA072449 X03658 AI665896
AI600996 AI714773 AI714866 AI734719 AI881220
AI834059 AI861190 AI770530 AI939785 AW067285
AW055712 AW191162 BE639090 CC145989 CC740799
CC748768 CC753488 CC753451 CC835417 AC187090
AY109330 G10781 FJ909679 X03697 AI677544
AI670648 AI881453 AI739854 AI770511 AW091230
AW447866 AW061681 AW498152 AW331428 AW574415
BE224734 BE345155 AI396125 CC739806 CC739807
CC753489 CC759099 CC759100 CC824010 AC186797
AC187869 AC194036 AC195531 AC203868 AC199401
X78415 AI612296 AI738289 AI734664 AI861499
AI834442 AI770512 AW144925 AW000402 AW054144
AW497983 AW282336 AW331604 AW400181 BE344660
BE345277 BE056958 W21692 W49898 AI396053
CC149526 CC148515 CC739011 CC740800 AC186578
AY103740 AY111658 AY111865 FJ910962 FJ910704
FJ910133 FJ909742 X73472 AI714688 AI770501
AI714410 AI666256 AI691642 AI834712 AI881319
AI881366 AI881830 AI881701 AI947532 AW076442
AW147135 AW400126 AW498022 AW231874 BE128915
BE129798 BI543181 AZ916444 AZ916496 CC755543
CC832691 CC822685 AC204638 AC198670 AC206859
DQ059319 G10780 X03714 AI649646 AI621883
AI770473 AI692027 AI737938 AI666247 AI861174
AI795312 AI941537 AW066865 AW066144 AW066460
AW066940 AW215999 AW257993 AW261388 AW282317
BE345559 BE055918 BE123327 BG266611 AI438849
AI444798 CC782013      

EST Contigs in Bin 8.01

Here is the set of 7 distinct contigs verified to be in this chromosomal region.

PUT-1-171a-Zea_mays-16925 PUT-1-171a-Zea_mays-16921 PUT-3-171a-Zea_mays-9912 PUT-8-171a-Zea_mays-5072 PUT-8-171a-Zea_mays-5669
PUT-8-171a-Zea_mays-9901 PUT-8-171a-Zea_mays-12274      

SSRs in Bin 8.01

Here are the 13 SSRs that have been verified to be in this chromosomal region.

(AAAG)6 p-umc2352 (ACG)4 p-umc1483 (ATTGC)5 p-umc1075
(GAC)4 p-umc1139 (GCC)4 p-umc1327 (GCC)4 p-umc2042
(GCTA)4 p-umc1414 (TC)7 p-umc1786 AG(16) p-bnlg2037
AG(17) p-bnlg1252 AG(19) p-bnlg1073 AG(33) p-bnlg1194
CA p-umc1592    

BACs in Bin 8.01

View bin 8.01 at MaizeSequence.org to see the latest genomic alignment of the sequenced BACs - sequenced BACs are noted below with an *.

***********

Here are the 228 BACs that have been verified to be in this chromosomal region.

b0004J01 (@ AY109699 by in silico) b0004K20 (@ AY109699 by in silico) b0030H09 (@ AY109699 by in silico)
b0075H20 (@ AY109699 by in silico) b0108D19 (@ AY109699 by in silico) b0166N01 (@ AY109699 by in silico)
b0167I15 (@ AY109699 by in silico) b0200E18 (@ AY109699 by in silico) c0047A02 (@ AY109699 by in silico)
c0067O18 (@ AY109699 by in silico) c0077F14 (@ AY109699 by in silico) c0158H23 (@ AY109699 by in silico)
b0030H09 (@ AY111865 by in silico) b0075H20 (@ AY111865 by in silico) b0166N01 (@ AY111865 by in silico)
b0167I15 (@ AY111865 by in silico) c0147M15 (@ AY111865 by in silico) b0021B20 (@ bnlg1194 by SSR PCR)
b0054J07 (@ bnlg1194 by SSR PCR) b0059E17 (@ bnlg1194 by SSR PCR) b0061L22 (@ bnlg1194 by SSR PCR)
b0162K09 (@ bnlg1194 by SSR PCR) b0210G22 (@ bnlg1194 by SSR PCR) b0227M07 (@ bnlg1194 by SSR PCR)
b0264P03 (@ bnlg1194 by SSR PCR) b0266J10 (@ bnlg1194 by SSR PCR) b0036K19 (@ bnlg2037 by SSR PCR)
b0187C21 (@ bnlg2037 by SSR PCR) b0197N03 (@ bnlg2037 by SSR PCR) b0202K03 (@ bnlg2037 by SSR PCR)
b0235B23 (@ bnlg2037 by SSR PCR) b0273K06 (@ bnlg2037 by SSR PCR) b0273O06 (@ bnlg2037 by SSR PCR)
b0137I10 (@ csu29c by in silico) c0001L16 (@ csu29c by in silico) c0007G16 (@ csu29c by in silico)
c0065H17 (@ csu29c by in silico) c0100L11 (@ csu29c by in silico) c0119L13 (@ csu29c by in silico)
c0120F18 (@ csu29c by in silico) c0162L12 (@ csu29c by in silico) c0169N10 (@ csu29c by in silico)
c0192E01 (@ csu29c by in silico) c0209K23 (@ csu29c by in silico) c0236B14 (@ csu29c by in silico)
b0004A17 (@ csu319 by in silico) b0059M03 (@ csu319 by in silico) b0085C14 (@ csu319 by in silico)
b0091D24 (@ csu319 by in silico) b0106A21 (@ csu319 by in silico) b0128B13 (@ csu319 by in silico)
b0140J05 (@ csu319 by in silico) b0163N17 (@ csu319 by in silico) b0194H14 (@ csu319 by in silico)
b0201G08 (@ csu319 by in silico) b0196L04 (@ csu597b(dah) by in silico) b0208E04 (@ csu597b(dah) by in silico)
b0106F09 (@ csu675b(prh) by in silico) c0173M13 (@ csu675b(prh) by in silico) c0225I21 (@ csu675b(prh) by in silico)
c0225J07 (@ csu675b(prh) by in silico) c0225K04 (@ csu675b(prh) by in silico) c0225K07 (@ csu675b(prh) by in silico)
b0058K03 (@ hsp1 by in silico) b0072A09 (@ hsp1 by in silico) b0080E23 (@ hsp1 by in silico)
b0116P17 (@ hsp1 by in silico) b0184N06 (@ hsp1 by in silico) c0070L02 (@ hsp1 by in silico)
c0167D01 (@ hsp1 by in silico) c0190I13 (@ hsp1 by in silico) c0204I01 (@ hsp1 by in silico)
b0006N04 (@ lrk pseudo by in silico) b0009J20 (@ lrk pseudo by in silico) b0011N18 (@ lrk pseudo by in silico)
b0016A15 (@ lrk pseudo by in silico) b0016D11 (@ lrk pseudo by in silico) b0024J17 (@ lrk pseudo by in silico)
b0031K01 (@ lrk pseudo by in silico) b0038A11 (@ lrk pseudo by in silico) b0051L22 (@ lrk pseudo by in silico)
b0066B17 (@ lrk pseudo by in silico) b0067C07 (@ lrk pseudo by in silico) b0067I12 (@ lrk pseudo by in silico)
b0069J23 (@ lrk pseudo by in silico) b0086O06 (@ lrk pseudo by in silico) b0098K04 (@ lrk pseudo by in silico)
b0101I18 (@ lrk pseudo by in silico) b0101M20 (@ lrk pseudo by in silico) b0102A11 (@ lrk pseudo by in silico)
b0104C24 (@ lrk pseudo by in silico) b0108G06 (@ lrk pseudo by in silico) b0117K05 (@ lrk pseudo by in silico)
b0130P23 (@ lrk pseudo by in silico) b0131G06 (@ lrk pseudo by in silico) b0135G15 (@ lrk pseudo by in silico)
b0138L13 (@ lrk pseudo by in silico) b0145O13 (@ lrk pseudo by in silico) b0146K15 (@ lrk pseudo by in silico)
b0161D14 (@ lrk pseudo by in silico) b0178C22 (@ lrk pseudo by in silico) b0189K19 (@ lrk pseudo by in silico)
b0199D18 (@ lrk pseudo by in silico) b0203H11 (@ lrk pseudo by in silico) c0016F05 (@ lrk pseudo by in silico)
c0023H18 (@ lrk pseudo by in silico) c0030K23 (@ lrk pseudo by in silico) c0037C23 (@ lrk pseudo by in silico)
c0062C12 (@ lrk pseudo by in silico) c0072D03 (@ lrk pseudo by in silico) c0072F01 (@ lrk pseudo by in silico)
c0078F21 (@ lrk pseudo by in silico) c0080A13 (@ lrk pseudo by in silico) c0086K09 (@ lrk pseudo by in silico)
c0089I09 (@ lrk pseudo by in silico) c0090O11 (@ lrk pseudo by in silico) c0097G07 (@ lrk pseudo by in silico)
c0109L08 (@ lrk pseudo by in silico) c0115B18 (@ lrk pseudo by in silico) c0117D05 (@ lrk pseudo by in silico)
c0118L15 (@ lrk pseudo by in silico) c0140K02 (@ lrk pseudo by in silico) c0145I13 (@ lrk pseudo by in silico)
c0170I05 (@ lrk pseudo by in silico) c0181L09 (@ lrk pseudo by in silico) c0184C08 (@ lrk pseudo by in silico)
c0184I19 (@ lrk pseudo by in silico) c0186M15 (@ lrk pseudo by in silico) c0190M24 (@ lrk pseudo by in silico)
c0194J04 (@ lrk pseudo by in silico) c0196L14 (@ lrk pseudo by in silico) c0208D15 (@ lrk pseudo by in silico)
b0004B17 (@ npi220a by RFLP Hybridization) b0012P22 (@ npi220a by RFLP Hybridization) b0015K21 (@ npi220a by RFLP Hybridization)
b0016D01 (@ npi220a by RFLP Hybridization) b0050N23 (@ npi220a by RFLP Hybridization) b0059M03 (@ npi220a by RFLP Hybridization)
b0063E24 (@ npi220a by RFLP Hybridization) b0063O08 (@ npi220a by RFLP Hybridization) b0074F09 (@ npi220a by RFLP Hybridization)
b0091D24 (@ npi220a by RFLP Hybridization) b0094L01 (@ npi220a by RFLP Hybridization) b0098O01 (@ npi220a by RFLP Hybridization)
b0099M07 (@ npi220a by RFLP Hybridization) b0106A21 (@ npi220a by RFLP Hybridization) b0128B13 (@ npi220a by RFLP Hybridization)
b0135H13 (@ npi220a by RFLP Hybridization) b0135J19 (@ npi220a by RFLP Hybridization) b0136P16 (@ npi220a by RFLP Hybridization)
b0154F16 (@ npi220a by RFLP Hybridization) b0163N17 (@ npi220a by RFLP Hybridization) b0164K21 (@ npi220a by RFLP Hybridization)
b0194H14 (@ npi220a by RFLP Hybridization) b0201G08 (@ npi220a by RFLP Hybridization) b0244H01 (@ npi220a by RFLP Hybridization)
b0269A08 (@ npi220a by RFLP Hybridization) b0030H09 (@ umc1075 by SSR PCR) b0075H20 (@ umc1075 by SSR PCR)
b0166N01 (@ umc1075 by SSR PCR) b0167I15 (@ umc1075 by SSR PCR) b0272O01 (@ umc1075 by SSR PCR)
b0027B17 (@ umc1139 by in silico) c0011P19 (@ umc1139 by in silico) c0027J04 (@ umc1139 by in silico)
c0027J05 (@ umc1139 by in silico) c0032H16 (@ umc1139 by in silico) c0111P04 (@ umc1139 by in silico)
c0131D22 (@ umc1139 by in silico) c0135B24 (@ umc1139 by in silico) c0138A10 (@ umc1139 by in silico)
c0139M18 (@ umc1139 by in silico) c0172F06 (@ umc1139 by in silico) b0013A15 (@ umc1327 by in silico)
b0034E12 (@ umc1327 by in silico) b0035F16 (@ umc1327 by in silico) b0046H02 (@ umc1327 by in silico)
b0051F17 (@ umc1327 by in silico) b0061D08 (@ umc1327 by in silico) b0095E05 (@ umc1327 by in silico)
b0100I22 (@ umc1327 by in silico) b0128H22 (@ umc1327 by in silico) b0145G19 (@ umc1327 by in silico)
b0154L21 (@ umc1327 by in silico) b0155P20 (@ umc1327 by in silico) b0158J05 (@ umc1327 by in silico)
b0163C02 (@ umc1327 by in silico) b0163L10 (@ umc1327 by in silico) b0189F01 (@ umc1327 by in silico)
b0212N02 (@ umc1327 by in silico) c0005C09 (@ umc1327 by in silico) c0014C14 (@ umc1327 by in silico)
c0027M06 (@ umc1327 by in silico) c0029B13 (@ umc1327 by in silico) c0048F04 (@ umc1327 by in silico)
c0053I22 (@ umc1327 by in silico) c0056G11 (@ umc1327 by in silico) c0059O05 (@ umc1327 by in silico)
c0089E08 (@ umc1327 by in silico) c0141N21 (@ umc1327 by in silico) c0179C05 (@ umc1327 by in silico)
c0210D13 (@ umc1327 by in silico) c0211M15 (@ umc1327 by in silico) b0205P16 (@ umc1483 by in silico)
c0057E13 (@ umc1483 by in silico) c0084G16 (@ umc1483 by in silico) c0090H08 (@ umc1483 by in silico)
c0139L06 (@ umc1483 by in silico) c0205E06 (@ umc1483 by in silico) c0210A20 (@ umc1483 by in silico)
c0210N10 (@ umc1483 by in silico) b0046F09 (@ umc1786 by in silico) b0191F19 (@ umc1786 by in silico)
c0022O22 (@ umc1786 by in silico) c0057G05 (@ umc1786 by in silico) c0057H06 (@ umc1786 by in silico)
c0065F04 (@ umc1786 by in silico) c0072E24 (@ umc1786 by in silico) c0096A17 (@ umc1786 by in silico)
c0096C19 (@ umc1786 by in silico) c0125C19 (@ umc1786 by in silico) c0143F07 (@ umc1786 by in silico)
c0180D17 (@ umc1786 by in silico) c0206F20 (@ umc1786 by in silico) c0206H15 (@ umc1786 by in silico)
c0210C22 (@ umc1786 by in silico) b0058I18 (@ umc2352a by SSR PCR) b0131M13 (@ umc2352a by SSR PCR)    

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